Lenny,
I always used dynajet powercommander for all my fuel injected bikes, and was offhandedly wondering on how I could get one for the trooper. The setup was super easy, and I'm sure you could get one for an engine with 4 injectors, instead of the 8 all my bikes had. Software is super easy, and the wiring was relatively simple. The module keeps a record of the 02 readings, allowing for adjustments.
I haven't phoned dynajet simply because its out of my budget, and there are more important things to do before I fiddle with power settings, but still... I do remember the dynajet costing me about 300...
Noc, you have to find the short. It'll only get worse.
I'm goin Lenny's route - I've ordered a bew fusebox to replace the rear seat one and will be hanging all my relays off the back wall.
NOTE TO ALL: Replace all your fuses with decent stuff, from bosch or whatever. My problems started with crappy fuses that didn't burn out when they should.